Resources and documentation for UK Biobank to OMOP CDM v5.3.1 conversion
Destination Field | Source field | Logic | Comment field |
---|---|---|---|
observation_id | id | ||
person_id | person_id | Use eid (not included) | |
observation_concept_id | concept_id | ||
observation_date | start_date | ||
observation_datetime | start_datetime | ||
observation_type_concept_id | type_concept_id | In between patient reported and clinical study? = population study Best fit would be from visit types = Health Examination Current options: 45905771 - Observation Recorded from a Survey or 581413 - Observation from Measurement | |
value_as_number | value_as_number | ||
value_as_string | value_as_string | ||
value_as_concept_id | value_as_concept_id | ||
qualifier_concept_id | qualifier_concept_id | ||
unit_concept_id | unit_concept_id | ||
provider_id | provider_id | ||
visit_occurrence_id | visit_occurrence_id | Lookup visit occurrence belonging to this person (eid) and this instance_id. | |
visit_detail_id | |||
observation_source_value | source_value | ||
observation_source_concept_id | source_concept_id | ||
unit_source_value | unit_source_value | ||
qualifier_source_value | qualifier_source_value |