ukbiobank-omop-etl

Resources and documentation for UK Biobank to OMOP CDM v5.3.1 conversion

View the Project on GitHub thehyve/ukbiobank-omop-etl

Table name: condition_occurrence

Reading from stem_table

Destination Field Source field Logic Comment field
condition_occurrence_id id    
person_id person_id    
condition_start_date start_date    
condition_concept_id concept_id    
condition_start_datetime start_datetime    
condition_end_date end_date    
condition_end_datetime end_datetime    
condition_type_concept_id type_concept_id    
stop_reason stop_reason    
provider_id provider_id    
visit_occurrence_id visit_occurrence_id    
visit_detail_id      
condition_source_value source_value    
condition_source_concept_id source_concept_id    
condition_status_source_value condition_status_source_value    
condition_status_concept_id condition_status_concept_id