Resources and documentation for UK Biobank to OMOP CDM v5.3.1 conversion
Cancer EHR Acquired from national registries.
Destination Field | Source field | Logic | Comment field |
---|---|---|---|
condition_occurrence_id | |||
person_id | |||
condition_start_date | 40005-16.0 | ||
condition_concept_id | 40006-16.0 40011-16.0 |
Combine with 40011 (histology) to map to a SNOMED cancer condition. - see also convention of the OHDSI oncology wg |
|
condition_start_datetime | |||
condition_end_date | |||
condition_end_datetime | |||
condition_type_concept_id | |||
stop_reason | |||
provider_id | |||
visit_occurrence_id | |||
visit_detail_id | |||
condition_source_value | 40006-16.0 | ||
condition_source_concept_id | 40006-16.0 | ||
condition_status_source_value | |||
condition_status_concept_id |
Destination Field | Source field | Logic | Comment field |
---|---|---|---|
condition_occurrence_id | |||
person_id | |||
condition_start_date | |||
condition_concept_id | |||
condition_start_datetime | |||
condition_end_date | |||
condition_end_datetime | |||
condition_type_concept_id | |||
stop_reason | |||
provider_id | |||
visit_occurrence_id | |||
visit_detail_id | |||
condition_source_value | |||
condition_source_concept_id | |||
condition_status_source_value | |||
condition_status_concept_id |